List of disease-related biomarkers

The following table shows the list of disease-related biomarkers extracted from the literature by our text mining approach. Each row represents a disease-related biomarker and all disease-related biomarkers are ranked based on a score based on document frequencies. Also, a link to the co-occurrence sentences and provenance metadata for each disease-biomarker association is available. The content in the table is firstly ranked in descendent order according to the score. The user can browse the data through the Search and Sort by column functionalities. The information for each disease-biomarker association is organized as follows:

ColumnContent
ScoreDisease-biomarkers associations are scored based on the frequency of each association in the literature. The score is a variant of the TF-IDF model (see ref. Salton et al., (1988). doi:10.1016/0306-4573(88)90021-0).
#abstractsTotal number of publications where the association was found.
Disease (CUI)Disease identification based on the UMLS Concept Unique Identifier (CUI).
Disease nameName of the disease concept.
Biomarker (GeneID)Gene identification based on the NCBI Gene Identifier (GeneID).
Gene symbolOfficial Gene symbol provided by HGNC.
Co-occurrence sentencesLink to the specific co-occurrence sentences and related provenance information.

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Score #abstracts Disease (CUI) Disease name Biomarker (GeneID) Gene symbol Co-occurrence sentences
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Score #abstracts Disease (CUI) Disease name Biomarker (GeneID) Gene symbol Co-occurrence sentences

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