2015

Piñero J. Computational approaches and resources to support translational research in human diseases. University Pompeu Fabra. Thesis Director: Furlong LI. December 17, 2015. Link

Carrio P, Sanz F, Pastor M. Towards a unifying strategy for the structure-based prediction of toxicological endpoints. Arch Toxicol, 2015 . PMID: 26553148 .

Sanz F, Carrio P, Lopez O, Capoferri L, Kooi DP, Vermeulen NPE, Geerke DP, Montanari F, Ecker GF, Schwab CH, Kleinoder T, Magdziarz T, Pastor M. Integrative Modeling Strategies for Predicting Drug Toxicities at the eTOX Project. Mol Inform, 2015; 34 (6-7):477-484; SI DOI: 10.1002/minf.201400193.

Carrio P, Lopez O, Sanz F, Pastor M. eTOXlab, an open source modeling framework for implementing predictive models in production environments. Journal of Cheminformatics, 2015; 7:8. PMID: 25774224 . DOI: 10.1186/s13321-015-0058-6.

Marti-Solano M, Iglesias A, de Fabritiis G, Sanz F, Brea J, Loza MI, Pastor M, Selent J.Detection of New Biased Agonists for the Serotonin 5-HT2A Receptor: Modeling and Experimental Validation. Mol Pharmacol, 2015; 87 (4): 740-746. PMID: 25661038 . DOI: 10.1124/mol.114.097022.

Tong Shu Li, Àlex Bravo,  Laura I. Furlong, Benjamin M. Good, Andrew I. Su. Extracting structured chemical-induced disease relations from free text via crowdsourcing. Li et al. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 292-298 PDF

Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong. Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, 266-273. PDF

Núria Queralt-Rosinach, Tobias Kuhn, Christine Chichester, Michel Dumontier, Ferran Sanz, Laura I Furlong. Publishing DisGeNET as Nanopublications. Semantic Web, vol. Preprint, no. Preprint, pp. 1-10, 2015. DOI: 10.3233/SW-150189

Rosa Faner, Alba Gutiérrez-Sacristán, Ady Castro-Acosta, Solène Grosdidier, Wenqi Gan, Milagros Sánchez-Mayor,
Jose Luis Lopez-Campos, Francisco Pozo-Rodriguez, Ferran Sanz, David Mannino, Laura I. Furlong and Alvar Agusti. Molecular and clinical diseasome of comorbidities in exacerbated COPD patients. Eur Respir J 2015; ERJ-00763-2015. DOI: 10.1183/13993003.00763-2015

Mayer MA, Furlong LI, Torre P, Planas I, Cots F, Izquierdo E, Portabella J, Rovira J,  Gutierrez-Sacristan A, Sanz F. Reuse of EHRs to Support Clinical Research in a Hospital of Reference. Stud Health Technol Inform 2015; 210:224-6.

Carbonell P, Mayer MA, Bravo A. Exploring brand-name drug mentions on twitter for pharmacovigilance. Stud Health Technol Inform 2015; 210:55-9.

Alba Gutierrez-Sacristan; Solene Grosdidier; Olga Valverde; Marta Torrens; Alex Bravo; Janet Pinero; Ferran Sanz; Laura I. Furlong. PsyGeNET: a knowledge platform on psychiatric disorders and their genes. Bioinformatics 2015; doi: 10.1093/bioinformatics/btv301

Pinero Janet, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI. DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes. Database 2015; doi: 10.1093/database/bav028

Berenstein AJ, Piñero J, Furlong LI, Chernomoretz A. Mining the modular structure of protein interaction networks. PLoS One. 2015 Apr 9;10(4):e0122477. doi: 10.1371/journal.pone.0122477. eCollection 2015. PubMed PMID: 25856434.

Bravo, À.; Piñero, J.; Queralt, N.; Rautschka, M.; Furlong, L.I. Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. BMC Bioinformatics 2015, 16:55  doi:10.1186/s12859-015-0472-9